Dr Mark Fricker: List of publications

Showing 1 to 137 of 137 publications
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Automated and accurate segmentation of leaf venation networks via deep learning

Introduction: 11th International Botanical Microscopy meeting.

A mechanistic explanation of the transition to simple multicellularity in fungi.

Chitosan inhibits septin-mediated plant infection by the rice blast fungus Magnaporthe oryzae in a Protein Kinase C and Nox1 NADPH oxidase-dependent manner

Quantitative analysis of plant ER architecture and dynamics.

The fluorescent protein sensor roGFP2-Orp1 monitors in vivo H2 O2 and thiol redox integration and elucidates intracellular H2 O2 dynamics during elicitor-induced oxidative burst in Arabidopsis.

Quantitation of ER Structure and Function.

ATP sensing in living plant cells reveals tissue gradients and stress dynamics of energy physiology.

Automated analysis of Physarum network structure and dynamics

The Mycelium as a Network.

Mesoscale analyses of fungal networks as an approach for quantifying phenotypic traits

Microcompartmentation of cytosolic aldolase by interaction with the actin cytoskeleton in Arabidopsis.

Experimental models for Murray's law

Effective delivery of volatile biocides employing mesoporous silicates for treating biofilms.

MSL1 is a mechanosensitive ion channel that dissipates mitochondrial membrane potential and maintains redox homeostasis in mitochondria during abiotic stress.

A C-terminal amphipathic helix is necessary for the in vivo tubule-shaping function of a plant reticulon.

Making microscopy count: quantitative light microscopy of dynamic processes in living plants.

Quantitative Redox Imaging Software.

Energetic Constraints on Fungal Growth.

The Specification of Geometric Edges by a Plant Rab GTPase Is an Essential Cell-Patterning Principle During Organogenesis in Arabidopsis.

Immobilized Subpopulations of Leaf Epidermal Mitochondria Mediate PENETRATION2-Dependent Pathogen Entry Control in Arabidopsis.

Analysis of plant mitochondrial function using fluorescent protein sensors.

The EF-hand Ca2+ binding protein MICU choreographs mitochondrial Ca2+ dynamics in Arabidopsis

The 'mitoflash' probe cpYFP does not respond to superoxide.

Mesoscale analyses of fungal networks as an approach for quantifying phenotypic traits

CDC-42 and RAC-1 regulate opposite chemotropisms in Neurospora crassa.

An update: improvements in imaging perfluorocarbon-mounted plant leaves with implications for studies of plant pathology, physiology, development and cell biology.

Foraging by a wood-decomposing fungus is ecologically adaptive.

Robust anti-oxidant defences in the rice blast fungus Magnaporthe oryzae confer tolerance to the host oxidative burst.

Adaptive Path-Finding and Transport Network Formation by the Amoeba-Like Organism Physarum

Nitric oxide generated by the rice blast fungus Magnaporthe oryzae drives plant infection.

Studies of Physcomitrella patens reveal that ethylene-mediated submergence responses arose relatively early in land-plant evolution.

Physiological significance of network organization in fungi

Mitochondrial 'flashes': a radical concept repHined.

A bioimage informatics approach to automatically extract complex fungal networks.

Taxonomies of Networks

Taxonomies of Networks from Community Structure

A perturbation in glutathione biosynthesis disrupts endoplasmic reticulum morphology and secretory membrane traffic in Arabidopsis thaliana

Coherence enhancing diffusion filtering based on the Phase Congruency Tensor

Local phase approaches to extract biomedical networks

Advection, diffusion, and delivery over a network

Advection, diffusion, and delivery over a network.

Contrast independent detection of branching points in network-like structures

Contrast-independent curvilinear structure detection in biomedical images.

Analysis of fungal networks

Pulsing of membrane potential in individual mitochondria: a stress-induced mechanism to regulate respiratory bioenergetics in Arabidopsis.

The circularly permuted yellow fluorescent protein cpYFP that has been used as a superoxide probe is highly responsive to pH but not superoxide in mitochondria: implications for the existence of superoxide 'flashes'.

Network automata: Coupling structure and function in dynamic networks

Growth-induced mass flows in fungal networks.

Fungal network responses to grazing.

Rules for biologically inspired adaptive network design.

Forisome dispersion in Vicia faba is triggered by Ca(2+) hotspots created by concerted action of diverse Ca(2+) channels in sieve elements.

Adaptive biological networks

Sieve element Ca2+ channels as relay stations between remote stimuli and sieve tube occlusion in Vicia faba.

The NADPH-dependent thioredoxin system constitutes a functional backup for cytosolic glutathione reductase in Arabidopsis.

Monitoring the in vivo redox state of plant mitochondria: effect of respiratory inhibitors, abiotic stress and assessment of recovery from oxidative challenge.

The metabolic response of Arabidopsis roots to oxidative stress is distinct from that of heterotrophic cells in culture and highlights a complex relationship between the levels of transcripts, metabolites, and flux.

Saprotrophic cord systems: Dispersal mechanisms in space and time

Evidence for nickel/proton antiport activity at the tonoplast of the hyperaccumulator plant Alyssum lesbiacum.

Grazing alters network architecture during interspecific mycelial interactions

Confocal imaging of glutathione redox potential in living plant cells.

Imaging complex nutrient dynamics in mycelial networks.

Quantifying dynamic resource allocation illuminates foraging strategy in Phanerochaete velutina.

Decrease in manganese superoxide dismutase leads to reduced root growth and affects tricarboxylic acid cycle flux and mitochondrial redox homeostasis.

Imaging of long-distance alpha-aminoisobutyric acid translocation dynamics during resource capture by Serpula lacrymans.

Fourier-based spatial mapping of oscillatory phenomena in fungi (vol 44, pg 1077, 2007)

Chapter 1 Mycelial networks: Structure and dynamics

Imaging Thiol-Based Redox Processes in Live Cells

Quantitative and qualitative analysis of plant membrane traffic using fluorescent proteins.

The Interplay between Structure and Function in Fungal Networks

Emergence of self-organised oscillatory domains in fungal mycelia.

Fourier-based spatial mapping of oscillatory phenomena in fungi.

Biological solutions to transport network design.

Imaging complex nutrient dynamics in mycelial networks

Nitrite reduces cytoplasmic acidosis under anoxia.

Ratiometric fluorescence-imaging assays of plant membrane traffic using polyproteins.

Interplay between function and structure in complex networks.

The vacuole system is a significant intracellular pathway for longitudinal solute transport in basidiomycete fungi.

Imaging cellular stress dynamics

Mycelial foraging strategies of saprotrophic cord-forming basidiomycetes

Quantitative fluorescence microscopy: from art to science.

The role of wood decay fungi in the carbon and nitrogen dynamics of the forest floor

New approaches to investigating the function of mycelial networks

Simulating colonial growth of fungi with the Neighbour-Sensing model of hyphal growth.

Cell-specific measurement of cytosolic glutathione in poplar leaves.

Noncircadian oscillations in amino acid transport have complementary profiles in assimilatory and foraging hyphae of Phanerochaete velutina

Control of demand-driven biosynthesis of glutathione in green Arabidopsis suspension culture cells.

A greener world: the revolution in plant bioimaging.

Continuous imaging of amino-acid translocation in intact mycelia of Phanerochaete velutina reveals rapid, pulsatile fluxes

Quantitative in vivo measurement of glutathione in Arabidopsis cells.

Confocal imaging of metabolism in vivo: pitfalls and possibilities.

Glutathione biosynthesis in Arabidopsis trichome cells

Direct measurement of glutathione in epidermal cells of intact Arabidopsis roots by two-photon laser scanning microscopy.

Measurement of glutathione levels in intact roots of Arabidopsis.

Imaging techniques in plant transport: Meeting review

Light perception and the role of the xanthophyll cycle in blue-light-dependent chloroplast movements in Lemna trisulca L.

The role of calcium in blue-light-dependent chloroplast movement in Lemna trisulca L.

The fission yeast chromo domain encoding gene chp1(+) is required for chromosome segregation and shows a genetic interaction with alpha-tubulin.

Quantitative Confocal Fluorescence Measurements in Living Tissue

pH gradients are not associated with tip growth in pollen tubes of Lilium longiflorum.

The convoluted nucleus.

Cell proliferation and hair tip growth in the Arabidopsis root are under mechanistically different forms of redox control

Four-dimensional imaging of living chondrocytes in cartilage using confocal microscopy: a pragmatic approach.

Interphase nuclei of many mammalian cell types contain deep, dynamic, tubular membrane-bound invaginations of the nuclear envelope

Interphase nuclei of many mammalian cell types contain deep, dynamic, tubular membrane-bound invaginations of the nuclear envelope.

Aberration control in quantitative imaging of botanical specimens by multidimensional fluorescence microscopy

Multidimensional fluorescence microscopy: Optical distortions in quantitative imaging of biological specimens

Stomata

PURIFICATION, SEQUENCING AND FUNCTIONS OF CALRETICULIN FROM MAIZE

PROTOCOLS FOR DETERMINING CHONDROCYTE VOLUME IN-SITU FROM 3-DIMENSIONAL CONFOCAL IMAGES

Genomic sequence of a calnexin homolog from Arabidopsis thaliana.

Fluorescence in situ hybridisation of multiple probes on a single microscope slide.

Two Transduction Pathways Mediate Rapid Effects of Abscisic Acid in Commelina Guard Cells

Two Transduction Pathways Mediate Rapid Effects of Abscisic Acid in Commelina Guard Cells.

De novo formation of several features of a centromere following introduction of a Y alphoid YAC into mammalian cells.

TUBULAR MEMBRANE-BOUND INTRANUCLEAR STRUCTURES IN MAMMALIAN-CELLS

Peptides derived from the auxin binding protein elevate Ca2+ and pH in stomatal guard cells of Vicia faba: a confocal fluorescence ratio imaging study.

Modulation of K+ channels in Vicia stomatal guard cells by peptide homologs to the auxin-binding protein C terminus.

Brefeldin A affects the endomembrane system and vesicle trafficking in higher plants

CONFOCAL FLUORESCENCE RATIO IMAGING OF PH IN PLANT-CELLS

THE ROLE OF CA2+ AND ABA IN THE REGULATION OF STOMATAL APERTURE

Wavelength considerations in confocal microscopy of botanical specimens

Cytosolic Ca2+-concentrations and distributions in rhizoids of Chara fragilis Desv. determined by ratio analysis of the fluorescent probe indo-1

Stomatal responses measured using a viscous flow (liquid) porometer

Role of Calcium in Signal Transduction of Commelina Guard Cells

Role of Calcium in Signal Transduction of Commelina Guard Cells.

Characterising plant chromosomes and their 3-D organisation using CLSM

Quantitative visualisation of 3D biological CLSM images

Visualisation and measurement of the calcium message in guard cells.

Nitrate-sensitive ATPase activity and proton pumping in guard cell protoplasts of Commelina

FLUORESCENCE RATIO IMAGING AND PHOTOMETRY OF CALCIUM IN LIVING PLANT-CELLS

Signal transduction in plant cells and the calcium message.

SOME PROPERTIES OF PROTON PUMPING ATPASES AT THE PLASMA-MEMBRANE AND TONOPLAST OF GUARD-CELLS

THE 3-D LOCALIZATION OF CHROMOSOMES USING CONFOCAL MICROSCOPY

VOLUME MEASUREMENT OF GUARD-CELL VACUOLES DURING STOMATAL MOVEMENTS USING CONFOCAL MICROSCOPY

Vanadate sensitive ATPase and phosphatase-activity in guard-cell protoplasts of Commelina

IntEResting structures: formation and applications of organised smooth endoplasmic reticulum in plant cells.