Professor Dmitry Filatov: List of publications

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Evolution of mutation rate in astronomically large phytoplankton populations.

The Location of the Pseudoautosomal Boundary in Silene latifolia

Senecio as a model system for integrating studies of genotype, phenotype and fitness.

Strong divergent selection at multiple loci in two closely related species of ragworts adapted to high and low elevations on Mount Etna.

Evolution of Codon Usage Bias in Diatoms.

One thousand plant transcriptomes and the phylogenomics of green plants.

Repeated species radiations in the recent evolution of the key marine phytoplankton lineage Gephyrocapsa.

Adaptive Evolution Is Common in Rapid Evolutionary Radiations.

Early Sex-Chromosome Evolution in the Diploid Dioecious Plant Mercurialis annua.

Immediate Dosage Compensation Is Triggered by the Deletion of Y-Linked Genes in Silene latifolia.

Resolving the backbone of the Brassicaceae phylogeny for investigating trait diversity.

Extreme Lewontin's Paradox in Ubiquitous Marine Phytoplankton Species.

The western Mediterranean region provided the founder population of domesticated narrow-leafed lupin.

Introduction: Sex chromosomes and speciation.

The two "rules of speciation" in species with young sex chromosomes.

Pleistocene glacial cycles drive isolation, gene flow and speciation in the high-elevation Andes.

The Mutation Rate and the Age of the Sex Chromosomes in Silene latifolia.

A Comparison of Selective Pressures in Plant X-Linked and Autosomal Genes.

Exploring the genetic and adaptive diversity of a pan-Mediterranean crop wild relative: narrow-leafed lupin.

A new subfamily classification of the Leguminosae based on a taxonomically comprehensive phylogeny

Evolution of nickel hyperaccumulation and serpentine adaptation in the Alyssum serpyllifolium species complex.

Coupled enhancer and coding sequence evolution of a homeobox gene shaped leaf diversity.

Erratum: The Cardamine hirsuta genome offers insight into the evolution of morphological diversity.

The Cardamine hirsuta genome highlights the pervasive role of transcription factors and tandem gene duplications in morphological diversity

The Cardamine hirsuta genome offers insight into the evolution of morphological diversity.

The Cardamine hirsuta genome offers insight into the evolution of morphological diversity

Lost crops of the Incas: Origins of domestication of the Andean pulse crop tarwi, Lupinus mutabilis.

Widespread adaptive evolution during repeated evolutionary radiations in New World lupins.

Demographic history of speciation in a Senecio altitudinal hybrid zone on Mt. Etna.

The large-X effect in plants: increased species divergence and reduced gene flow on the Silene X-chromosome.

Maintenance of Species Boundaries Despite Ongoing Gene Flow in Ragworts.

Genome of Leptomonas pyrrhocoris: a high-quality reference for monoxenous trypanosomatids and new insights into evolution of Leishmania.

A new physical mapping approach refines the sex-determining gene positions on the Silene latifolia Y-chromosome.

The genomic bases of morphological divergence and reproductive isolation driven by ecological speciation in Senecio (Asteraceae).

Rapid Y degeneration and dosage compensation in plant sex chromosomes.

Homomorphic plant sex chromosomes are coming of age.

Recent and massive expansion of the mating-type-specific region in the smut fungus Microbotryum.

Cardamine hirsuta: a versatile genetic system for comparative studies.

Genomic divergence during speciation driven by adaptation to altitude.

Recent Ecological Selection On Regulatory Divergence Is Shaping Clinal Variation In Senecio On Mount Etna

Recent ecological selection on regulatory divergence is shaping clinal variation in senecio on mount etna

Molecular adaptation during a rapid adaptive radiation.

Rapid speciation with gene flow following the formation of Mt. Etna.

Dynamics of drift, gene flow, and selection during speciation in silene

Adaptive signals in algal Rubisco reveal a history of ancient atmospheric carbon dioxide.

How much do we know about evolution of sex chromosomes in plants?

Dynamics of drift, gene flow, and selection during speciation in silene

How much do we know about evolution of sex chromosomes in plants?

Rubisco evolution in C₄ eudicots: an analysis of Amaranthaceae sensu lato.

Does local adaptation cause high population differentiation of Silene latifolia Y chromosomes?

Plant y chromosome degeneration is retarded by haploid purifying selection

Plant Y chromosome degeneration is retarded by haploid purifying selection.

DNA polymorphism in recombining and non-recombing mating-type-specific loci of the smut fungus Microbotryum

Dynamic gene order on the Silene latifolia y chromosome

Changes in Rubisco kinetics during the evolution of C4 photosynthesis in Flaveria (Asteraceae) are associated with positive selection on genes encoding the enzyme.


Gene flow and species cohesion following the spread of Schiedea globosa (Caryophyllaceae) across the Hawaiian Islands.

Arabidopsis thaliana leaf form evolved via loss of KNOX expression in leaves in association with a selective sweep.

Genome wide analyses reveal little evidence for adaptive evolution in many plant species.

Positive selection differs between protein secondary structure elements in Drosophila.

Processing and population genetic analysis of multigenic datasets with ProSeq3 software.

Photoinduced, family-specific, site-selective cleavage of TIM-barrel proteins.

Evolution of neo-sex chromosomes in Silene diclinis.

Evolutionary strata in a small mating-type-specific region of the smut fungus Microbotryum violaceum.

Silene as a model system in ecology and evolution.

Evolution of genome size in Hawaiian endemic genus Schiedea (Caryophyllaceae)

Recent spread of a retrotransposon in the Silene latifolia genome, apart from the Y chromosome.

Conflicting phylogenetic signals in the SlX1/Y1 gene in Silene

Defining regions and rearrangements of the Silene latifolia Y chromosome.

A selective sweep in or near the Silene latifolia X-linked gene SlssX.

A cytogenetic view of sex chromosome evolution in plants.

A selective sweep in the chloroplast DNA of dioecious silene (section Elisanthe).

Widespread positive selection in the photosynthetic Rubisco enzyme.

Molecular adaptation during adaptive radiation in the Hawaiian endemic genus Schiedea.

Human polymorphism and human-chimpanzee divergence in pseudoautosomal region correlate with local recombination rate

Extreme population structure and high interspecific divergence of the Silene Y chromosome.

Evolutionary history of Silene latifolia sex chromosomes revealed by genetic mapping of four genes.

Positive and negative selection on mammalian Y chromosomes.

Evolutionary genetics: Stickleback's view of sex chromosome evolution

Indirect evidence from DNA sequence diversity for genetic degeneration of the Y-chromosome in dioecious species of the plant Silene: the SlY4/SlX4 and DD44-X/DD44-Y gene pairs.

Substitution rates in a new Silene latifolia sex-linked gene, SlssX/Y

Substitution rates in a new Silene latifolia sex-linked gene, SlssX/Y.

Isolation of genes from plant Y chromosomes.

Age dependence of the level of copia retrotransposon expression in the testes of Drosophila melanogaster

Impact of the regulatory regions of retrotransposon copia on the level of its expression in testes of Drosophila melanogaster

DNA diversity in Hawaiian endemic plant Schiedea globosa.

A gradient of silent substitution rate in the human pseudoautosomal region.

High mutation rates in human and ape pseudoautosomal genes.

PROSEQ: A software for preparation and evolutionary analysis of DNA sequence data sets

Substitution rates in the X- and Y-linked genes of the plants, Silene latifolia and S. dioica.

DNA diversity in sex-linked and autosomal genes of the plant species Silene latifolia and Silene dioica.

Analysis and evolution of two functional Y-linked loci in a plant sex chromosome system

Low variability in a Y-linked plant gene and its implications for Y-chromosome evolution.

DNA polymorphism, haplotype structure and balancing selection in the Leavenworthia PgiC locus.

Retrotransposon-host genome interaction: Mechanisms and effects

The relationship between the rate of transposition and transposable element copy number for copia and Doc retrotransposons of Drosophila melanogaster

Age dependence of the copia transposition rate is positively associated with copia transcript abundance in a Drosophila melanogaster isogenic line

Correlation between the number of occupied sites, transcript levels and transposition rate of retrotransposon in copia Drosophila melanogaster

Enhanced transcription of the copia retrotransposon in Drosophila melanogaster testes